STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96606.1Transglutaminase-like superfamily protein. (235 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.794
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
  
    0.677
AQR92787.1
Anaerobic benzoate catabolism transcriptional regulator.
  
     0.575
yhcR
Endonuclease YhcR precursor; Belongs to the 5'-nucleotidase family.
  
 
  0.574
ptrA_2
Protease 3 precursor; Belongs to the peptidase M16 family.
       0.561
cotI_3
Spore coat protein I.
  
     0.548
AQR94985.1
Transglutaminase-like superfamily protein.
  
     0.523
cotI_1
Spore coat protein I.
  
     0.520
cotI_2
Spore coat protein I.
  
     0.519
lytA_18
Autolysin.
  
     0.515
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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