Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phoR_7Alkaline phosphatase synthesis sensor protein PhoR. (504 aa)    
Predicted Functional Partners:
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 0.982
srrA_5
Transcriptional regulatory protein SrrA.
 
 0.977
baeS_4
Signal transduction histidine-protein kinase BaeS.
 
 
0.937
phoR_8
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
0.936
srrA_4
Transcriptional regulatory protein SrrA.
 
 0.881
srrA_6
Transcriptional regulatory protein SrrA.
 
 0.880
srrA_8
Transcriptional regulatory protein SrrA.
 
 0.875
srrA_1
Transcriptional regulatory protein SrrA.
 
 0.867
yycF_4
Transcriptional regulatory protein YycF.
 
 0.858
hssR_2
Heme response regulator HssR.
 
 0.858
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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