Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96621.1Hypothetical protein. (315 aa)    
Predicted Functional Partners:
AQR96622.1
Hypothetical protein.
       0.718
tsaB
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
 0.578
AQR95938.1
Hypothetical protein.
  
     0.539
AQR95326.1
Hypothetical protein.
  
     0.536
AQR96623.1
Hypothetical protein.
       0.536
AQR93451.1
Hypothetical protein.
  
     0.512
AQR94865.1
Zinc-responsive transcriptional regulator.
 
     0.499
AQR95919.1
Phosphotransferase enzyme family protein.
 
   
 0.461
AQR95372.1
Putative zinc ribbon domain protein.
  
     0.436
ydeA_2
Putative protease YdeA.
 
     0.431
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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