Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AQR96632.1Iron-sulfur flavoprotein. (268 aa)    
Predicted Functional Partners:
AQR94517.1
Iron-sulfur flavoprotein.
  
     0.774
AQR94812.1
Iron-sulfur flavoprotein.
  
     0.773
sgcG_9
2-amino-4-deoxychorismate dehydrogenase.
  
     0.773
AQR94565.1
Hypothetical protein.
 
     0.667
AQR96631.1
Phosphodiesterase.
       0.586
frp
NADPH-flavin oxidoreductase.
 
 
 0.577
rsxB_4
Electron transport complex subunit RsxB.
 
 
 0.565
AQR96633.1
Transcriptional regulator PadR-like family protein.
       0.560
AQR96730.1
NADPH-dependent FMN reductase.
  
     0.557
AQR94571.1
Ferredoxin.
 
 
 0.554
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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