Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR96634.1Homocysteine methyltransferase. (307 aa)    
Predicted Functional Partners:
AQR93217.1
Glutathionylspermidine synthase.
  
     0.663
AQR92871.1
Hypothetical protein.
  
     0.633
AQR96635.1
Hypothetical protein; N-terminal phage replisome organiser (Phage_rep_org_N).
 
     0.601
lspA
Lipoprotein signal peptidase.
  
     0.591
yitJ
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
  
 
 0.585
AQR96633.1
Transcriptional regulator PadR-like family protein.
 
     0.573
AQR94429.1
Hypothetical protein; Glycosyltransferase family 28 C-terminal domain.
  
     0.547
lysP_1
Lysine-specific permease.
  
  
 0.532
lysP_2
Lysine-specific permease.
  
  
 0.532
AQR93236.1
Alpha/beta hydrolase family protein.
  
    0.466
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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