STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
inhAIsonitrile hydratase. (200 aa)    
Predicted Functional Partners:
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
   
    0.744
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.567
rpoS
RNA polymerase sigma factor RpoS; Belongs to the sigma-70 factor family.
   
 
 0.567
sttH_1
Streptothricin hydrolase.
 
    0.545
bdhA
NADH-dependent butanol dehydrogenase A.
  
    0.540
AQR96639.1
Hypothetical protein.
       0.539
tam
Trans-aconitate 2-methyltransferase.
 
     0.514
azoB
NAD(P)H azoreductase.
 
    0.505
sttH_2
Streptothricin hydrolase.
 
    0.505
lexA_1
LexA repressor.
   
 
 0.490
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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