Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
inhAIsonitrile hydratase. (200 aa)    
Predicted Functional Partners:
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
   
    0.774
AQR96639.1
Hypothetical protein.
       0.539
tam
Trans-aconitate 2-methyltransferase.
 
     0.514
ydeA_2
Putative protease YdeA.
 
   
 0.489
cdhR
HTH-type transcriptional regulator CdhR.
  
 
 0.485
melR_3
Melibiose operon regulatory protein.
  
 
 0.485
AQR96637.1
Acetyltransferase (GNAT) family protein.
       0.477
lexA_1
LexA repressor.
   
 
 0.470
lexA_2
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
   
 
 0.470
lexA_3
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
 
 0.470
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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