STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tamTrans-aconitate 2-methyltransferase. (261 aa)    
Predicted Functional Partners:
crp_3
cAMP receptor protein.
     
 0.654
AQR96639.1
Hypothetical protein.
       0.571
ubiG_3
Ubiquinone biosynthesis O-methyltransferase.
 
 
 0.523
cfa_1
Cyclopropane-fatty-acyl-phospholipid synthase.
    
 0.519
AQR96989.1
Hypothetical protein.
    
 0.519
cfa_2
Cyclopropane-fatty-acyl-phospholipid synthase.
    
 0.519
inhA
Isonitrile hydratase.
 
     0.514
ubiG_1
Ubiquinone biosynthesis O-methyltransferase.
 
 
 0.511
ubiE_8
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
 
 
0.469
AQR96930.1
N-glycosyltransferase.
  
 
 0.464
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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