STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bglX_1Periplasmic beta-glucosidase precursor. (800 aa)    
Predicted Functional Partners:
xynB_3
Beta-xylosidase.
 
   
 0.734
estB
Esterase EstB.
  
 
 0.679
AQR96723.1
Enterobactin/ferric enterobactin esterase.
     
 0.668
lyc_3
Autolytic lysozyme.
    
 0.641
lyc_4
Autolytic lysozyme.
    
 0.641
AQR96722.1
Hypothetical protein.
       0.621
mepH_3
Murein DD-endopeptidase MepH precursor.
    
 0.612
xynB_4
Beta-xylosidase.
 
   
 0.607
dat_2
D-alanine aminotransferase.
  
  
 0.546
amiC
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
    
 0.520
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.