STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xynB_3Beta-xylosidase. (650 aa)    
Predicted Functional Partners:
bglX_1
Periplasmic beta-glucosidase precursor.
 
   
 0.729
AQR96732.1
Xylose isomerase-like TIM barrel.
 
  
  0.710
AQR96731.1
Hypothetical protein.
 
  
  0.705
melR_1
Melibiose operon regulatory protein.
 
 
 0.688
AQR97200.1
Xylose isomerase-like TIM barrel.
  
  
  0.679
adaA_5
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
  
     0.663
AQR97201.1
Hypothetical protein.
  
  
  0.654
AQR96723.1
Enterobactin/ferric enterobactin esterase.
 
     0.651
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
 
 0.649
rhaS_5
HTH-type transcriptional activator RhaS.
  
     0.640
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.