STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96739.1Hypothetical protein. (544 aa)    
Predicted Functional Partners:
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.974
araQ_9
L-arabinose transport system permease protein AraQ.
 
 0.973
yteP_1
Putative multiple-sugar transport system permease YteP.
 
 
 0.964
yteP_2
Putative multiple-sugar transport system permease YteP.
 
 
 0.963
yehU_2
Sensor histidine kinase YehU.
 
   
 0.914
AQR96737.1
Putative response regulatory protein.
 
  
 0.804
AQR96758.1
Bacterial extracellular solute-binding protein.
  
   
 0.716
araQ_12
L-arabinose transport system permease protein AraQ.
 
 0.704
AQR98189.1
Polysaccharide deacetylase.
 
    0.688
AQR92994.1
Putative response regulatory protein.
 
  
 0.678
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.