STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yicJ_2Inner membrane symporter YicJ. (465 aa)    
Predicted Functional Partners:
xylB2
Non-reducing end alpha-L-arabinofuranosidase BoGH43B precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.569
bglX_2
Periplasmic beta-glucosidase precursor; Belongs to the glycosyl hydrolase 3 family.
     
 0.468
xylB4
Non-reducing end alpha-L-arabinofuranosidase BoGH43A precursor; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.422
lacZ
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
  
 0.413
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.401
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.