Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ypdA_2Sensor histidine kinase YpdA. (576 aa)    
Predicted Functional Partners:
btr_2
HTH-type transcriptional activator Btr.
 
 
 0.979
AQR97147.1
Putative response regulatory protein.
 
 
 0.879
AQR92994.1
Putative response regulatory protein.
 
 
 0.873
AQR93681.1
Putative response regulatory protein.
 
 
 0.871
AQR98182.1
Putative response regulatory protein.
 
 
 0.871
AQR97111.1
Putative response regulatory protein.
 
 
 0.870
AQR96737.1
Putative response regulatory protein.
 
 
 0.866
cheY_5
Chemotaxis protein CheY.
 
 
 0.855
AQR97641.1
Putative response regulatory protein.
 
 
 0.841
degU_1
Transcriptional regulatory protein DegU.
 
 
 0.826
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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