Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQR96758.1Bacterial extracellular solute-binding protein. (542 aa)    
Predicted Functional Partners:
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.974
yteP_1
Putative multiple-sugar transport system permease YteP.
 
 
 0.973
yteP_2
Putative multiple-sugar transport system permease YteP.
 
 
 0.973
araQ_9
L-arabinose transport system permease protein AraQ.
 
 0.972
btr_2
HTH-type transcriptional activator Btr.
 
  
 0.911
ypdA_2
Sensor histidine kinase YpdA.
 
   
 0.791
lacF_1
Lactose transport system permease protein LacF.
 
 0.789
lacG_1
Lactose transport system permease protein LacG.
 
 0.773
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.761
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
 0.761
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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