STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96758.1Bacterial extracellular solute-binding protein. (542 aa)    
Predicted Functional Partners:
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.973
araQ_9
L-arabinose transport system permease protein AraQ.
 
 0.972
yteP_1
Putative multiple-sugar transport system permease YteP.
 
 
 0.971
yteP_2
Putative multiple-sugar transport system permease YteP.
 
 
 0.971
btr_2
HTH-type transcriptional activator Btr.
 
  
 0.907
ypdA_2
Sensor histidine kinase YpdA.
 
   
 0.804
lacG_1
Lactose transport system permease protein LacG.
 
 0.769
lacF_1
Lactose transport system permease protein LacF.
 
 0.745
araQ_2
L-arabinose transport system permease protein AraQ.
  
 0.729
araQ_3
L-arabinose transport system permease protein AraQ.
  
 0.729
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.