STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hopD2Effector protein hopD2. (823 aa)    
Predicted Functional Partners:
AQR95908.1
Hypothetical protein.
  
     0.649
AQR98131.1
Hypothetical protein.
  
     0.472
AQR93592.1
Fibronectin type III domain protein.
    
 0.455
celD
Endoglucanase D precursor.
    
 0.455
celS
Endoglucanase S precursor; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
    
 0.455
celK
Cellulose 1,4-beta-cellobiosidase precursor.
    
 0.455
lytB_5
Putative endo-beta-N-acetylglucosaminidase precursor.
  
     0.427
AQR94783.1
Hypothetical protein.
   
    0.426
AQR95859.1
Hypothetical protein.
   
    0.426
AQR97699.1
Acetyltransferase (GNAT) family protein.
   
    0.426
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.