STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96792.1Hypothetical protein. (342 aa)    
Predicted Functional Partners:
ulaE
L-ribulose-5-phosphate 3-epimerase UlaE.
 
     0.886
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
     0.809
ulaA
Ascorbate-specific permease IIC component UlaA.
 
     0.808
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
     0.808
ulaC
Ascorbate-specific phosphotransferase enzyme IIA component.
 
     0.761
ulaF_1
L-ribulose-5-phosphate 4-epimerase UlaF.
 
     0.681
AQR95973.1
HIRAN domain protein.
  
     0.460
AQR97179.1
Cadherin-like beta sandwich domain protein.
  
     0.445
lspA
Lipoprotein signal peptidase.
  
     0.445
tktB_1
Transketolase 2.
       0.437
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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