Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
srrA_6Transcriptional regulatory protein SrrA. (228 aa)    
Predicted Functional Partners:
phoR_8
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.965
phoR_7
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.880
phoR_1
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.867
phoR_12
Alkaline phosphatase synthesis sensor protein PhoR.
  
 0.861
todS_1
Sensor histidine kinase TodS.
 
 0.858
tcrY
Putative sensor histidine kinase TcrY.
 
 0.850
phoR_11
Alkaline phosphatase synthesis sensor protein PhoR.
 
 0.850
baeS_4
Signal transduction histidine-protein kinase BaeS.
 
 0.840
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.837
baeS_1
Signal transduction histidine-protein kinase BaeS.
 
 0.836
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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