Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dtpTDi-/tripeptide transporter. (468 aa)    
Predicted Functional Partners:
oppA
Oligopeptide-binding protein OppA precursor.
     
 0.690
ispA
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
     
 0.662
cbf2
Putative peptidyl-prolyl cis-trans isomerase Cbf2 precursor.
   
  
 0.661
licC_4
Lichenan permease IIC component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
      
 0.630
ermC
rRNA adenine N-6-methyltransferase.
      
 0.630
nadK
NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
  0.586
yhdG_3
Putative amino acid permease YhdG.
  
 
 
 0.570
yhdG_2
Putative amino acid permease YhdG.
  
 
 
 0.561
nudC
NADH pyrophosphatase.
  
  
  0.551
pepO_1
Neutral endopeptidase.
 
  
 0.527
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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