Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96837.1Hypothetical protein. (305 aa)    
Predicted Functional Partners:
dnaJ_3
Chaperone protein DnaJ.
 
     0.949
AQR96839.1
Hypothetical protein.
 
     0.907
AQR95804.1
Hypothetical protein.
 
     0.786
AQR97935.1
Hypothetical protein.
  
    0.670
AQR97679.1
CYTH domain protein.
 
    0.552
AQR93304.1
LysM domain protein.
  
     0.538
rpiR
HTH-type transcriptional regulator RpiR.
  
     0.517
AQR97678.1
37-kD nucleoid-associated bacterial protein.
 
     0.494
spoVB_3
Stage V sporulation protein B.
  
     0.492
AQR93697.1
Putative GTP cyclohydrolase 1 type 2.
   
    0.459
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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