STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (402 aa)    
Predicted Functional Partners:
hacA_1
Homoaconitase large subunit.
  
 0.997
hacA_2
Homoaconitase large subunit.
  
 0.992
dmdA_2
2,3-dimethylmalate dehydratase large subunit.
  
 0.992
gltB_2
Ferredoxin-dependent glutamate synthase 1.
    
 0.990
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.983
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.975
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.975
korB
2-oxoglutarate oxidoreductase subunit KorB.
     
 0.973
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.879
ldh1_1
L-lactate dehydrogenase 1; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
  
 
 0.879
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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