STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bsdC_2Phenolic acid decarboxylase subunit C. (475 aa)    
Predicted Functional Partners:
pad1_1
Putative aromatic acid decarboxylase.
 
 
 0.957
pad1_2
Putative aromatic acid decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
 
 
 0.930
AQR96857.1
Hypothetical protein.
 
  
 0.812
bsdD
Phenolic acid decarboxylase subunit D.
     
 0.775
AQR96087.1
Hypothetical protein; Belongs to the UPF0311 family.
    
 0.536
gltC_4
HTH-type transcriptional regulator GltC.
     
 0.536
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
 
  0.502
pyrK_2
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
 
  0.502
pyrK_3
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
 
  0.502
asrB
Anaerobic sulfite reductase subunit B.
  
 
  0.502
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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