STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cimH_1Citrate/malate transporter. (447 aa)    
Predicted Functional Partners:
cimH_2
Citrate/malate transporter.
  
  
 
0.901
AQR96870.1
NAD-dependent malic enzyme.
  
  
 0.691
citC_2
[citrate [pro-3S]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
   
 0.579
citD_2
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.567
citX_2
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
   
 0.560
citF_2
Citrate lyase alpha chain.
 
   
 0.558
dcuS_2
Sensor histidine kinase DcuS.
 
  
 0.547
citE_2
Citrate lyase subunit beta; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.545
dcuS_1
Sensor histidine kinase DcuS.
 
  
 0.520
dcuR_1
Transcriptional regulatory protein DcuR.
 
  
 0.513
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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