Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrEABC transporter ATP-binding protein YtrE. (232 aa)    
Predicted Functional Partners:
AQR96884.1
FtsX-like permease family protein.
 
 0.972
macB_1
Macrolide export ATP-binding/permease protein MacB.
 0.939
AQR93454.1
FtsX-like permease family protein.
 
 0.929
macB_4
Macrolide export ATP-binding/permease protein MacB.
 0.882
AQR96886.1
Putative efflux pump membrane fusion protein.
  
 
 0.831
bceB
Bacitracin export permease protein BceB.
  
 0.786
ytrF
ABC transporter permease YtrF precursor.
 
 0.786
yxdM
ABC transporter permease protein YxdM.
  
 0.786
skfE_2
SkfA peptide export ATP-binding protein SkfE.
  
 
 0.772
AQR93551.1
Macrolide transporter ATP-binding /permease protein.
  
 0.737
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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