STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96886.1Putative efflux pump membrane fusion protein. (472 aa)    
Predicted Functional Partners:
macB_4
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.901
macB_1
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.900
ytrE
ABC transporter ATP-binding protein YtrE.
  
 0.841
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
 0.821
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD.
 
 0.785
macB_5
Macrolide export ATP-binding/permease protein MacB.
 
 0.780
lagD
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 0.775
AQR97520.1
Putative efflux pump membrane fusion protein.
  
     0.709
AQR96884.1
FtsX-like permease family protein.
  
 
 0.649
AQR93019.1
Outer membrane efflux protein.
  
 0.645
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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