Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yqjAInner membrane protein YqjA. (210 aa)    
Predicted Functional Partners:
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.828
hndC_3
NADP-reducing hydrogenase subunit HndC.
 
  
 0.777
urdA
Urocanate reductase precursor.
    
 0.730
hndC_2
NADP-reducing hydrogenase subunit HndC.
 
  
 0.721
iscU
Iron-sulfur cluster assembly scaffold protein IscU.
   
 
 0.668
AQR94675.1
Hypothetical protein.
   
 
 0.668
tmoS_1
Sensor histidine kinase TmoS.
     
 0.649
sfp_3
4'-phosphopantetheinyl transferase sfp; Belongs to the P-Pant transferase superfamily.
      
 0.647
lgrE_3
Linear gramicidin dehydrogenase LgrE.
      
 0.646
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
 0.646
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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