STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chlDHypothetical protein. (1322 aa)    
Predicted Functional Partners:
AQR96893.1
Hypothetical protein.
 
     0.910
pilN
Fimbrial assembly protein PilN.
 
     0.906
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
  0.862
pilM
Competence protein A.
 
     0.782
ycdT_2
Putative diguanylate cyclase YcdT.
 
    0.758
ubiE_8
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
 
 
 0.752
AQR92871.1
Hypothetical protein.
 
    0.730
AQR97227.1
Cadherin-like beta sandwich domain protein.
  
     0.707
AQR96891.1
Hypothetical protein.
       0.699
smc_2
Chromosome partition protein Smc.
  
     0.693
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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