STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96893.1Hypothetical protein. (429 aa)    
Predicted Functional Partners:
pilN
Fimbrial assembly protein PilN.
 
 
 0.997
pilM
Competence protein A.
 
 
 0.979
chlD
Hypothetical protein.
 
     0.920
epsF_3
Type II secretion system protein F.
 
 
 
 0.810
AQR96892.1
Hypothetical protein.
       0.789
xpsE
Type II secretion system protein E.
  
 
 0.767
AQR96891.1
Hypothetical protein.
       0.753
AQR92871.1
Hypothetical protein.
 
     0.719
fimA
Fimbrial protein precursor.
 
  
 0.709
AQR95038.1
Hypothetical protein.
  
     0.702
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.