Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilMCompetence protein A. (391 aa)    
Predicted Functional Partners:
pilN
Fimbrial assembly protein PilN.
 
 
 0.993
AQR96893.1
Hypothetical protein.
 
 
 0.974
epsF_3
Type II secretion system protein F.
 
 
 0.937
xpsE
Type II secretion system protein E.
 
 
 0.918
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.894
epsF_2
Type II secretion system protein F.
 
 
 0.876
gspE
Putative type II secretion system protein E.
 
 
 0.853
pilT
Twitching mobility protein.
 
   
 0.832
fimA
Fimbrial protein precursor.
 
  
 0.829
chlD
Hypothetical protein.
 
     0.782
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.