Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epsF_3Type II secretion system protein F. (400 aa)    
Predicted Functional Partners:
xpsE
Type II secretion system protein E.
 
 
 0.992
gspE
Putative type II secretion system protein E.
 
 
 0.974
fimA
Fimbrial protein precursor.
 
  
 0.969
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
  
 0.964
pilM
Competence protein A.
 
 
 0.937
pilT
Twitching mobility protein.
 
  
 0.844
xcpT
Type II secretion system protein G precursor.
 
  
 0.839
comEA
ComE operon protein 1.
  
  
 0.798
AQR93345.1
Hypothetical protein.
   
  
 0.770
AQR96893.1
Hypothetical protein.
 
 
 
 0.761
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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