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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comCType 4 prepilin-like proteins leader peptide-processing enzyme. (250 aa)    
Predicted Functional Partners:
epsF_3
Type II secretion system protein F.
 
  
 0.964
xpsE
Type II secretion system protein E.
 
 
 0.955
epsF_2
Type II secretion system protein F.
 
  
 0.920
fimA
Fimbrial protein precursor.
 
  
 0.917
gspE
Putative type II secretion system protein E.
 
 
 0.911
pilM
Competence protein A.
 
  
 0.894
pilT
Twitching mobility protein.
 
   
 0.860
dprA
Hypothetical protein.
  
  
 0.852
comEA
ComE operon protein 1.
   
  
 0.826
xcpT
Type II secretion system protein G precursor.
 
  
 0.710
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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