Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching mobility protein. (345 aa)    
Predicted Functional Partners:
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.860
epsF_3
Type II secretion system protein F.
 
  
 0.844
epsF_2
Type II secretion system protein F.
 
  
 0.839
pilM
Competence protein A.
 
   
 0.832
gspE
Putative type II secretion system protein E.
 
 
0.752
xpsE
Type II secretion system protein E.
 
 
0.746
fimA
Fimbrial protein precursor.
 
  
 0.706
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.585
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.585
cinA_3
Putative competence-damage inducible protein; Belongs to the CinA family.
 
   
 0.562
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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