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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilTTwitching mobility protein. (345 aa)    
Predicted Functional Partners:
epsF_3
Type II secretion system protein F.
 
  
 0.877
epsF_2
Type II secretion system protein F.
 
  
 0.876
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.865
pilM
Competence protein A.
 
   
 0.838
gspE
Putative type II secretion system protein E.
 
 
0.766
xpsE
Type II secretion system protein E.
 
 
0.760
fimA
Fimbrial protein precursor.
 
  
 0.722
cinA_3
Putative competence-damage inducible protein; Belongs to the CinA family.
 
   
 0.541
pheA
P-protein.
     
 0.518
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.495
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.