Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR96966.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
AQR96967.1
Hypothetical protein.
 
 
 0.969
AQR96965.1
Hypothetical protein.
 
  
  0.958
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
 0.672
AQR96968.1
Hypothetical protein.
     
 0.631
AQR96972.1
Hypothetical protein.
   
 0.544
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.523
AQR96969.1
GDSL-like lipase/acylhydrolase.
       0.514
hag_3
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
       0.493
rfbD
UDP-galactopyranose mutase precursor.
   
 0.488
AQR96970.1
Hypothetical protein.
       0.434
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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