STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pseGUDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase. (341 aa)    
Predicted Functional Partners:
pseI
Pseudaminic acid synthase.
 
 
 0.986
neuB
N,N'-diacetyllegionaminic acid synthase.
 
 
 0.972
AQR96970.1
Hypothetical protein.
 
   
 0.928
kdsB_1
3-deoxy-manno-octulosonate cytidylyltransferase.
 
  
 0.920
kdsB_2
3-deoxy-manno-octulosonate cytidylyltransferase.
 
  
 0.909
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.829
AQR96972.1
Hypothetical protein.
 
    0.789
arnB
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.716
AQR96968.1
Hypothetical protein.
 
    0.690
AQR96965.1
Hypothetical protein.
  
    0.684
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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