STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96975.1Hypothetical protein. (225 aa)    
Predicted Functional Partners:
rfbD
UDP-galactopyranose mutase precursor.
 
 
 0.936
yitJ
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
  
 
  0.867
AQR96977.1
Hypothetical protein.
  
 
 0.777
AQR96976.1
Hypothetical protein.
       0.773
rfbX
Putative O-antigen transporter.
 
  
 0.771
AQR96968.1
Hypothetical protein.
 
  
 0.664
AQR96970.1
Hypothetical protein.
  
  
 0.603
AQR96972.1
Hypothetical protein.
  
 
 0.584
AQR95238.1
Polysaccharide biosynthesis protein.
 
  
 0.562
pgaC
poly-beta-1,6-N-acetyl-D-glucosamine synthase.
  
  
 0.538
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.