STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hddCD-glycero-alpha-D-manno-heptose 1-phosphate guanylyltransferase. (236 aa)    
Predicted Functional Partners:
rmd
GDP-6-deoxy-D-mannose reductase.
 
 0.964
rffG_1
dTDP-glucose 4,6-dehydratase 2.
 
 0.912
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
  
 0.911
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
 
 0.812
AQR96982.1
Hypothetical protein.
 
  
 0.810
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase.
  
 0.806
albA_2
Antilisterial bacteriocin subtilosin biosynthesis protein AlbA.
     
 0.791
neuB
N,N'-diacetyllegionaminic acid synthase.
 
 
 0.770
pgcA
Phosphoglucomutase.
  
 
 0.764
tll
dTDP-6-deoxy-L-talose 4-dehydrogenase.
 
 0.764
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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