STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96994.1Hypothetical protein. (385 aa)    
Predicted Functional Partners:
fcl
GDP-L-fucose synthase.
 
 
 0.779
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
 
 
 0.758
AQR96993.1
PGL/p-HBAD biosynthesis glycosyltransferase.
       0.689
epsJ_2
Putative glycosyltransferase EpsJ.
       0.620
AQR96990.1
Hypothetical protein.
  
  
 0.619
udk_1
Uridine kinase.
  
 
  0.609
AQR96991.1
Glycosyltransferase sugar-binding region containing DXD motif protein.
       0.594
gmd
GDP-mannose 4,6-dehydratase.
       0.591
AQR96997.1
Hypothetical protein.
 
     0.591
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
 
 0.587
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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