STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase. (360 aa)    
Predicted Functional Partners:
fcl
GDP-L-fucose synthase.
 0.998
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.951
AQR96993.1
PGL/p-HBAD biosynthesis glycosyltransferase.
 
  
 0.851
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
  
 
 0.835
AQR97002.1
Hypothetical protein.
 
 
 0.825
mfpsA
Mannosylfructose-phosphate synthase.
 
  
 0.809
AQR96997.1
Hypothetical protein.
 
     0.788
rffG_1
dTDP-glucose 4,6-dehydratase 2.
 
0.776
rmd
GDP-6-deoxy-D-mannose reductase.
 
0.723
AQR94527.1
UDP-glucose 4-epimerase.
  
 0.699
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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