STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR96999.1Hypothetical protein. (138 aa)    
Predicted Functional Partners:
desVI_2
dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose.
       0.757
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
       0.741
AQR96997.1
Hypothetical protein.
       0.697
mfpsA
Mannosylfructose-phosphate synthase.
       0.697
AQR97002.1
Hypothetical protein.
       0.697
gmd
GDP-mannose 4,6-dehydratase.
       0.645
pqqE
Coenzyme PQQ synthesis protein E.
       0.644
fcl
GDP-L-fucose synthase.
       0.524
AQR96994.1
Hypothetical protein.
       0.473
AQR97004.1
Hypothetical protein.
       0.456
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.