STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desVI_2dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose. (249 aa)    
Predicted Functional Partners:
AQR97002.1
Hypothetical protein.
 
     0.912
epsN
Putative pyridoxal phosphate-dependent aminotransferase EpsN.
  
 0.838
mfpsA
Mannosylfructose-phosphate synthase.
 
   
 0.781
AQR96999.1
Hypothetical protein.
       0.757
pqqE
Coenzyme PQQ synthesis protein E.
 
   
 0.757
AQR96997.1
Hypothetical protein.
 
     0.755
AQR94629.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.687
gmd
GDP-mannose 4,6-dehydratase.
  
  
 0.650
AQR94628.1
long-chain-fatty-acid--AMP ligase FadD32.
  
  
 0.633
grsB
Gramicidin S synthase 2.
 
  
 0.603
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.