STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
puuDGamma-glutamyl-gamma-aminobutyrate hydrolase PuuD. (198 aa)    
Predicted Functional Partners:
AQR97009.1
Hypothetical protein.
 
  
 0.879
cysC
Putative adenylyl-sulfate kinase.
  
  
 0.755
glmU_2
Bifunctional protein GlmU.
     
 0.725
ubiE_7
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
    0.688
AQR97011.1
Sulfatase.
       0.572
puuE
4-aminobutyrate aminotransferase PuuE; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.522
glnA_2
Glutamine synthetase.
  
  
 0.514
kdsB_2
3-deoxy-manno-octulosonate cytidylyltransferase.
       0.466
ppaX_2
Pyrophosphatase PpaX.
       0.439
ctpA
Carboxy-terminal processing protease CtpA precursor; Belongs to the peptidase S41A family.
   
    0.414
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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