STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsB_23-deoxy-manno-octulosonate cytidylyltransferase. (220 aa)    
Predicted Functional Partners:
pseI
Pseudaminic acid synthase.
 
 
 0.951
neuB
N,N'-diacetyllegionaminic acid synthase.
 
 
 0.951
pseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
 
  
 0.909
AQR96982.1
Hypothetical protein.
 
  
 0.897
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.888
ppaX_2
Pyrophosphatase PpaX.
       0.733
AQR97017.1
Hypothetical protein.
 
     0.728
rmlD_2
dTDP-4-dehydrorhamnose reductase.
  
    0.652
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
   0.647
AQR97011.1
Sulfatase.
       0.640
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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