STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97028.1FlgN protein. (136 aa)    
Predicted Functional Partners:
fla
Flagellar filament 41 kDa core protein.
  
    0.933
cheV
Chemotaxis protein CheV.
  
    0.932
AQR97029.1
Anti-sigma-28 factor, FlgM.
       0.844
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
    0.762
cheW_2
Chemotaxis protein CheW.
  
    0.742
fliN
Flagellar motor switch protein FliN.
       0.692
fliM
Flagellar motor switch protein FliM.
       0.657
cheW_3
Chemotaxis protein CheW.
  
    0.628
hag_4
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.585
csrA
Hypothetical protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
       0.578
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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