STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheY_4Chemotaxis protein CheY. (119 aa)    
Predicted Functional Partners:
cheC
CheY-P phosphatase CheC.
 
 
 0.997
fliN
Flagellar motor switch protein FliN.
 
 
 0.995
cheA_2
Chemotaxis protein CheA.
 
 0.994
cheA_1
Chemotaxis protein CheA.
 
 0.985
cheW_3
Chemotaxis protein CheW.
 
 
 0.951
cheW_2
Chemotaxis protein CheW.
 
 
 0.948
cheD_2
Chemoreceptor glutamine deamidase CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  
 0.947
fliM
Flagellar motor switch protein FliM.
 
  
 0.923
arlR_3
Response regulator ArlR.
  
 0.922
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
  
  
  0.913
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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