Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytrB_2ABC transporter ATP-binding protein YtrB. (285 aa)    
Predicted Functional Partners:
ytrA_3
HTH-type transcriptional repressor YtrA.
 
  
 0.921
AQR97069.1
Hypothetical protein.
       0.793
pilE
Hypothetical protein.
       0.793
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.775
AQR93229.1
ABC-2 family transporter protein.
  
 
 0.699
AQR93184.1
ABC-2 family transporter protein.
  
 0.692
AQR94169.1
ABC-2 family transporter protein.
  
 0.690
AQR94439.1
ABC-2 family transporter protein.
  
 0.690
AQR97165.1
ABC-2 family transporter protein.
 
 
 0.640
ybhS
Inner membrane transport permease YbhS.
  
 
 0.628
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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