STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
splBSpore photoproduct lyase. (348 aa)    
Predicted Functional Partners:
gpr
Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.590
AQR97088.1
Hypothetical protein.
       0.572
hemE
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
     
  0.517
AQR97086.1
Bacteriohemerythrin.
       0.497
mnmA_2
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
   
 0.496
AQR95762.1
L-Ala-D/L-Glu epimerase.
     
  0.490
ydbD
Putative manganese catalase.
  
     0.485
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase.
       0.479
yyaC
Hypothetical protein.
  
   
 0.475
mntP_1
Manganese efflux pump MntP; Probably functions as a manganese efflux pump.
  
     0.471
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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