STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQR97090.1Carboxynorspermidine synthase. (400 aa)    
Predicted Functional Partners:
nspC
Carboxynorspermidine/carboxyspermidine decarboxylase.
 
 
 0.994
speA_2
Arginine decarboxylase.
 
  
 0.962
aguA_1
Agmatine deiminase.
    
  0.914
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.622
grsB
Gramicidin S synthase 2.
  
 
 0.619
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine; Belongs to the spermidine/spermine synthase family.
     
 0.581
dhbF
Dimodular nonribosomal peptide synthase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.543
folE
GTP cyclohydrolase 1.
   
   0.528
gltB_2
Ferredoxin-dependent glutamate synthase 1.
   
 
 0.483
mbtB
Phenyloxazoline synthase MbtB.
  
 
 0.450
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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