STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97111.1Putative response regulatory protein. (540 aa)    
Predicted Functional Partners:
yehU_3
Sensor histidine kinase YehU.
 
 
 0.983
AQR97109.1
TMAO reductase system periplasmic protein TorT.
 
     0.942
ypdA_1
Sensor histidine kinase YpdA.
 
 
 0.918
yehU_4
Sensor histidine kinase YehU.
 
 
 0.913
ypdA_4
Sensor histidine kinase YpdA.
 
 
 0.905
AQR93680.1
Putative sensor-like histidine kinase.
 
 
 0.902
yehU_2
Sensor histidine kinase YehU.
 
 
 0.889
AQR97288.1
Putative sensor-like histidine kinase.
 
 
 0.889
AQR98183.1
Putative sensor-like histidine kinase.
 
 
 0.882
ypdA_5
Sensor histidine kinase YpdA.
 
 
 0.881
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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