STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQR97116.1Hypothetical protein. (83 aa)    
Predicted Functional Partners:
thiH_1
2-iminoacetate synthase.
 
   
 0.903
AQR95490.1
Putative ABC transporter permease protein.
  
 0.870
yfiZ
Putative siderophore transport system permease protein YfiZ precursor; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.870
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.870
bioB_1
Biotin synthase.
 
  
 0.850
der_2
GTPase Der.
 
   
 0.849
AQR93253.1
Hypothetical protein.
  
 0.846
btuF
Vitamin B12-binding protein.
  
 0.846
yfiY
Putative siderophore-binding lipoprotein YfiY precursor.
  
 0.846
yclQ
Putative ABC transporter solute-binding protein YclQ precursor.
  
 0.846
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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