Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
tmpC_2Membrane lipoprotein TmpC precursor. (369 aa)    
Predicted Functional Partners:
mglA_3
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.993
AQR97122.1
Beta-methylgalactoside transporter inner membrane component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.992
AQR94317.1
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
AQR97121.1
Branched-chain amino acid transport system / permease component.
 
 
 0.969
mglA_1
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.949
lsrA
Autoinducer 2 import ATP-binding protein LsrA.
 
 
 0.949
AQR94316.1
Beta-methylgalactoside transporter inner membrane component.
 
 
 0.933
tmpC_1
Membrane lipoprotein TmpC precursor.
  
  
 
0.900
deoD_2
Purine nucleoside phosphorylase DeoD-type.
       0.731
AQR97126.1
Hypothetical protein.
       0.641
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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