STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treR_2Trehalose operon transcriptional repressor. (244 aa)    
Predicted Functional Partners:
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.759
yydK
Putative HTH-type transcriptional regulator YydK.
  
     0.717
gmuR
HTH-type transcriptional regulator GmuR.
  
     0.703
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.563
lutR_3
HTH-type transcriptional regulator LutR.
  
  
0.559
lutR_1
HTH-type transcriptional regulator LutR.
  
  
0.557
btr_4
HTH-type transcriptional activator Btr.
 
  
 0.542
adaA_3
Bifunctional transcriptional activator/DNA repair enzyme AdaA.
 
  
 0.542
mcbR_2
HTH-type transcriptional regulator McbR.
  
   
 0.514
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
 
   
 0.478
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.