Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ytfTInner membrane ABC transporter permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family. (346 aa)    
Predicted Functional Partners:
araG
Arabinose import ATP-binding protein AraG.
 
 0.998
yjfF
Inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
  
 
0.996
ytfQ
ABC transporter periplasmic-binding protein YtfQ precursor.
 
 0.994
rbsB
D-ribose-binding periplasmic protein precursor.
 
 0.992
xylG_2
Xylose import ATP-binding protein XylG.
 
 0.969
xylG_1
Xylose import ATP-binding protein XylG; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
 
 0.968
mglA_2
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 0.967
alsB
D-allose-binding periplasmic protein precursor.
 
 0.930
mglB_12
D-galactose-binding periplasmic protein precursor.
 
 0.924
mglB_11
D-galactose-binding periplasmic protein precursor.
 
 0.921
Your Current Organism:
Clostridium saccharoperbutylacetonicum
NCBI taxonomy Id: 36745
Other names: ATCC 27021, C. saccharoperbutylacetonicum, Clostridium saccharoperbutylacetonicum Keis et al. 2001, DSM 14923, NCIMB 12606, strain N1-4 (HMT)
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